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An integrated approach to comparative assembly
(2014)
We describe a novel approach to comparative assembly that directly integrates anchoring alignments into the contig assembly process, enabling the extension of contig construction through the boundaries of repeat nodes in ...
Approximate k-mer matching using fuzzy hash maps
(IEEE Computer Society, 2014)
We present a fuzzy technique for approximate k-mer matching that combines the speed of hashing with the
sensitivity of dynamic programming. Our approach exploits the collision detection mechanism used by hash maps, unifying ...